Is there a way to create a knowledge base in the clipper? Currently I seem to only be able to create a knowledge base using the webpage then access it when using the clipper.
You can't create a Knowledge Base in the Web Clipper at present. We want to keep the Web Clipper code size down and the user interface as simple as possible. That said if there is sufficient interest in this we could add it. However as it is something you don't do very often then switching to the Clibu Web App doesn't seem too onerous.
I do plan on reworking the Knowledge Base user interface from the current dropdown menu selection to something like the Tags Filter, so you can enter a KB name. This will make it easier and quicker to open a KB when you have lots of them, as I do.